Index

_

__init__() (pheromone_dispersion.advection_operator.Advection method) (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation method) (pheromone_dispersion.diffusion_operator.Diffusion method) (pheromone_dispersion.diffusion_tensor.DiffusionTensor method) (pheromone_dispersion.gaussian_plume.Gaussian_plume_1source method) (pheromone_dispersion.gaussian_plume.Gaussian_plume_multisources method) (pheromone_dispersion.geom.MeshRect2D method) (pheromone_dispersion.identity_operator.Id method) (pheromone_dispersion.reaction_operator.Reaction method) (pheromone_dispersion.source_term.Source method) (pheromone_dispersion.velocity.Velocity method) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation method) (source_localization.control.Control method) (source_localization.cost.Cost method) (source_localization.obs.Obs method) (source_localization.population_dynamique.PopulationDynamicModel method) (source_localization.population_dynamique.StationnaryPopulationDynamicModel method)

_matvec() (pheromone_dispersion.advection_operator.Advection method) (pheromone_dispersion.diffusion_operator.Diffusion method) (pheromone_dispersion.identity_operator.Id method) (pheromone_dispersion.reaction_operator.Reaction method) (source_localization.population_dynamique.PopulationDynamicModel method) (source_localization.population_dynamique.StationnaryPopulationDynamicModel method) _rmatvec() (pheromone_dispersion.advection_operator.Advection method) (source_localization.population_dynamique.PopulationDynamicModel method) (source_localization.population_dynamique.StationnaryPopulationDynamicModel method)

A

A (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation attribute) A_adjoint (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation attribute) add_reg() (source_localization.cost.Cost method) adjoint_derivative_obs_operator() (source_localization.obs.Obs method) AdjointDiffusionConvectionReaction2DEquation (class in source_localization.adjoint_convection_diffusion_2D) Advection (class in pheromone_dispersion.advection_operator) alpha (source_localization.cost.Cost attribute) apply_control() (source_localization.control.Control method) at_current_time() (pheromone_dispersion.advection_operator.Advection method) (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation method) (pheromone_dispersion.diffusion_operator.Diffusion method) (pheromone_dispersion.diffusion_tensor.DiffusionTensor method) (pheromone_dispersion.source_term.Source method) (pheromone_dispersion.velocity.Velocity method) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation method)

at_horizontal_interface (pheromone_dispersion.diffusion_tensor.DiffusionTensor attribute) (pheromone_dispersion.velocity.Velocity attribute) at_vertical_interface (pheromone_dispersion.diffusion_tensor.DiffusionTensor attribute) (pheromone_dispersion.velocity.Velocity attribute)

B

background_value (source_localization.control.Control attribute)

C

c_est (source_localization.obs.Obs attribute) C_inv (source_localization.control.Control attribute) calc_dt_explicit_solver() (pheromone_dispersion.geom.MeshRect2D method) calc_dt_implicit_solver() (pheromone_dispersion.geom.MeshRect2D method) CDV() (pheromone_dispersion.gaussian_plume.Gaussian_plume_1source method) cell_above_upwind (pheromone_dispersion.velocity.Velocity attribute)

cell_left_upwind (pheromone_dispersion.velocity.Velocity attribute) cell_right_upwind (pheromone_dispersion.velocity.Velocity attribute) cell_under_upwind (pheromone_dispersion.velocity.Velocity attribute) Control (class in source_localization.control) Cost (class in source_localization.cost) cost_and_gradient() (source_localization.cost.Cost method) ctrl (source_localization.cost.Cost attribute)

D

D (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation attribute) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation attribute) d_est (source_localization.obs.Obs attribute) d_obs (source_localization.obs.Obs attribute) death_rate (source_localization.population_dynamique.PopulationDynamicModel attribute) deposition_coeff_from_land_occupation_data() (in module pheromone_dispersion.deposition_coeff) Diffusion (class in pheromone_dispersion.diffusion_operator) diffusion_tensor_from_velocity_field() (pheromone_dispersion.diffusion_tensor.DiffusionTensor method) DiffusionConvectionReaction2DEquation (class in pheromone_dispersion.convection_diffusion_2D) DiffusionTensor (class in pheromone_dispersion.diffusion_tensor)

div (pheromone_dispersion.velocity.Velocity attribute) dt (pheromone_dispersion.geom.MeshRect2D attribute) dt_obs_operator (source_localization.obs.Obs attribute) dtype (pheromone_dispersion.advection_operator.Advection attribute) (pheromone_dispersion.diffusion_operator.Diffusion attribute) (pheromone_dispersion.identity_operator.Id attribute) (pheromone_dispersion.reaction_operator.Reaction attribute) (source_localization.population_dynamique.PopulationDynamicModel attribute) (source_localization.population_dynamique.StationnaryPopulationDynamicModel attribute) dx (pheromone_dispersion.geom.MeshRect2D attribute) dy (pheromone_dispersion.geom.MeshRect2D attribute)

E

exclusion_domain (source_localization.control.Control attribute)

G

gaussian_plume() (pheromone_dispersion.gaussian_plume.Gaussian_plume_1source method) (pheromone_dispersion.gaussian_plume.Gaussian_plume_multisources method) Gaussian_plume_1source (class in pheromone_dispersion.gaussian_plume) Gaussian_plume_multisources (class in pheromone_dispersion.gaussian_plume)

generate_gif() (in module utils.generate_gif) geom_to_shapefile() (in module utils.geom_to_shapefile) gradient_descent() (in module source_localization.gradient_descent) gradient_objectif_wrt_d() (source_localization.cost.Cost method) gradient_objectif_wrt_S() (source_localization.cost.Cost method)

I

Id (class in pheromone_dispersion.identity_operator) ID (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation attribute) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation attribute) implemented_regularization_types (source_localization.cost.Cost attribute) implemented_solver_type (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation attribute) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation attribute)

index_obs_to_index_time_est (source_localization.obs.Obs attribute) index_time_est_to_index_obs (source_localization.obs.Obs attribute) init_inverse_matrix() (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation method) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation method) intersection_superlevel_set() (in module utils.superlevel_set) inv_matrix_implicit_part (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation attribute)

J

j_obs (source_localization.cost.Cost attribute)

j_reg (source_localization.cost.Cost attribute)

K

K (pheromone_dispersion.diffusion_operator.Diffusion attribute)

K_u (pheromone_dispersion.diffusion_tensor.DiffusionTensor attribute) K_u_t (pheromone_dispersion.diffusion_tensor.DiffusionTensor attribute)

L

L_x (pheromone_dispersion.geom.MeshRect2D attribute)

L_y (pheromone_dispersion.geom.MeshRect2D attribute) log_barrier_threshold (source_localization.control.Control attribute)

M

main() (in module pheromone_dispersion.cli) (in module pherosensor.cli) mass_cell (pheromone_dispersion.geom.MeshRect2D attribute) max_horizontal_U (pheromone_dispersion.velocity.Velocity attribute) max_vertical_U (pheromone_dispersion.velocity.Velocity attribute) MeshRect2D (class in pheromone_dispersion.geom) minimize() (source_localization.cost.Cost method) minus_U (pheromone_dispersion.advection_operator.Advection attribute) modify_weight_reg() (source_localization.cost.Cost method) module pheromone_dispersion pheromone_dispersion.advection_operator pheromone_dispersion.cli pheromone_dispersion.convection_diffusion_2D pheromone_dispersion.deposition_coeff pheromone_dispersion.diffusion_operator pheromone_dispersion.diffusion_tensor pheromone_dispersion.gaussian_plume pheromone_dispersion.geom pheromone_dispersion.identity_operator pheromone_dispersion.reaction_operator pheromone_dispersion.source_term pheromone_dispersion.velocity pherosensor.cli source_localization source_localization.adjoint_convection_diffusion_2D source_localization.control source_localization.cost source_localization.gradient_descent source_localization.obs source_localization.population_dynamique source_localization.proximal_gradient utils utils.generate_gif utils.geom_to_shapefile utils.plot_colormap utils.plot_cost utils.plot_ctrl utils.plot_ctrl_error utils.plot_env_param utils.plot_obs utils.superlevel_set

msh (pheromone_dispersion.advection_operator.Advection attribute) (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation attribute) (pheromone_dispersion.diffusion_operator.Diffusion attribute) (pheromone_dispersion.identity_operator.Id attribute) (pheromone_dispersion.reaction_operator.Reaction attribute) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation attribute) (source_localization.cost.Cost attribute) (source_localization.obs.Obs attribute) (source_localization.population_dynamique.PopulationDynamicModel attribute) (source_localization.population_dynamique.StationnaryPopulationDynamicModel attribute)

N

N_obs (source_localization.obs.Obs attribute)

nb_dt_in_obs_time_window (source_localization.obs.Obs attribute) nb_sensors (source_localization.obs.Obs attribute)

O

objectif() (source_localization.cost.Cost method) Obs (class in source_localization.obs) obs (source_localization.cost.Cost attribute)

obs_cost() (source_localization.cost.Cost method) obs_operator() (source_localization.obs.Obs method) onesensor_adjoint_derivative_obs_operator() (source_localization.obs.Obs method) onesensor_solver() (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation method)

P

pheromone_dispersion module pheromone_dispersion.advection_operator module pheromone_dispersion.cli module pheromone_dispersion.convection_diffusion_2D module pheromone_dispersion.deposition_coeff module pheromone_dispersion.diffusion_operator module pheromone_dispersion.diffusion_tensor module pheromone_dispersion.gaussian_plume module pheromone_dispersion.geom module pheromone_dispersion.identity_operator module pheromone_dispersion.reaction_operator module

pheromone_dispersion.source_term module pheromone_dispersion.velocity module pherosensor.cli module plot_colormap() (in module utils.plot_colormap) plot_colormap_all_timestep() (in module utils.plot_colormap) plot_cost() (in module utils.plot_cost) plot_cost_obs_comparison() (in module utils.plot_cost) plot_ctrl() (in module utils.plot_ctrl) plot_ctrl_all_timestep() (in module utils.plot_ctrl) plot_ctrl_map() (in module utils.plot_ctrl) plot_diffusion_tensor() (in module utils.plot_env_param) plot_downwindprofile() (in module pheromone_dispersion.gaussian_plume) plot_horizontalxs() (in module pheromone_dispersion.gaussian_plume) plot_mean_error_ctrl_comparison_vs_ite() (in module utils.plot_ctrl_error) plot_obs() (in module utils.plot_obs) plot_velocity_field() (in module utils.plot_env_param) plot_verticalxs() (in module pheromone_dispersion.gaussian_plume) population_dynamic_model (source_localization.control.Control attribute) PopulationDynamicModel (class in source_localization.population_dynamique) proximal_gradient() (in module source_localization.proximal_gradient)

R

R (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation attribute) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation attribute) R_inv (source_localization.obs.Obs attribute) Reaction (class in pheromone_dispersion.reaction_operator)

reaction_coeff (pheromone_dispersion.reaction_operator.Reaction attribute) reg_cost() (source_localization.cost.Cost method) reg_proximal_operator() (source_localization.cost.Cost method) regularization_types (source_localization.cost.Cost attribute) remove_reg() (source_localization.cost.Cost method)

S

S (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation attribute) set_source() (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation method) shape (pheromone_dispersion.advection_operator.Advection attribute) (pheromone_dispersion.diffusion_operator.Diffusion attribute) (pheromone_dispersion.identity_operator.Id attribute) (pheromone_dispersion.reaction_operator.Reaction attribute) (source_localization.population_dynamique.PopulationDynamicModel attribute) (source_localization.population_dynamique.StationnaryPopulationDynamicModel attribute) solver() (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation method) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation method) solver_est_at_obs_times() (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation method) solver_given_adj_deriv_obs_op() (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation method) Source (class in pheromone_dispersion.source_term) source_localization module source_localization.adjoint_convection_diffusion_2D module

source_localization.control module source_localization.cost module source_localization.gradient_descent module source_localization.obs module source_localization.population_dynamique module source_localization.proximal_gradient module StationnaryPopulationDynamicModel (class in source_localization.population_dynamique) sum_advection_flux_given_U() (in module pheromone_dispersion.advection_operator) superlevel_set() (in module utils.superlevel_set)

T

t (pheromone_dispersion.geom.MeshRect2D attribute) (pheromone_dispersion.source_term.Source attribute) (pheromone_dispersion.velocity.Velocity attribute) t_array (pheromone_dispersion.geom.MeshRect2D attribute) T_final (pheromone_dispersion.geom.MeshRect2D attribute) t_obs (source_localization.obs.Obs attribute) time_discretization (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation attribute) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation attribute)

time_interpolation (pheromone_dispersion.source_term.Source attribute) time_interpolation_at_horizontal_interface (pheromone_dispersion.velocity.Velocity attribute) time_interpolation_at_vertical_interface (pheromone_dispersion.velocity.Velocity attribute) time_interpolation_div (pheromone_dispersion.velocity.Velocity attribute) tol_inversion (pheromone_dispersion.convection_diffusion_2D.DiffusionConvectionReaction2DEquation attribute) (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation attribute) trajectory() (in module utils.plot_ctrl) transpose_inv_matrix_implicit_part (source_localization.adjoint_convection_diffusion_2D.AdjointDiffusionConvectionReaction2DEquation attribute)

U

U (pheromone_dispersion.advection_operator.Advection attribute) (pheromone_dispersion.diffusion_tensor.DiffusionTensor attribute) update_reaction_coeff() (pheromone_dispersion.reaction_operator.Reaction method) utils module utils.generate_gif module utils.geom_to_shapefile module utils.plot_colormap module

utils.plot_cost module utils.plot_ctrl module utils.plot_ctrl_error module utils.plot_env_param module utils.plot_obs module utils.superlevel_set module

V

value (pheromone_dispersion.source_term.Source attribute) (source_localization.control.Control attribute) Velocity (class in pheromone_dispersion.velocity)

velocity_field_from_meteo_data() (in module pheromone_dispersion.velocity) volume() (in module utils.superlevel_set) volume_intersection_superlevel_set() (in module utils.superlevel_set)

X

x (pheromone_dispersion.geom.MeshRect2D attribute) X_0 (pheromone_dispersion.geom.MeshRect2D attribute)

X_obs (source_localization.obs.Obs attribute) X_sensors (source_localization.obs.Obs attribute) x_vertical_interface (pheromone_dispersion.geom.MeshRect2D attribute)

Y

y (pheromone_dispersion.geom.MeshRect2D attribute)

y_horizontal_interface (pheromone_dispersion.geom.MeshRect2D attribute)